swfscDAS - Processing DAS Data Files

Process and summarize DAS data files. These files are typically, but do not have to be DAS <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF> data produced by the Southwest Fisheries Science Center (SWFSC) program 'WinCruz'. This package standardizes and streamlines basic DAS data processing, and includes a PDF with the DAS data format requirements expected by the package.

Last updated 15 days ago

jagscpp

6.64 score 4 stars 3 dependents 24 scripts 318 downloads

eSDM - Ensemble Tool for Predictions from Species Distribution Models

A tool which allows users to create and evaluate ensembles of species distribution model (SDM) predictions. Functionality is offered through R functions or a GUI (R Shiny app). This tool can assist users in identifying spatial uncertainties and making informed conservation and management decisions. The package is further described in Woodman et al (2019) <doi:10.1111/2041-210X.13283>.

Last updated 6 months ago

6.07 score 11 stars 24 scripts 456 downloads

rfPermute - Estimate Permutation p-Values for Random Forest Importance Metrics

Estimate significance of importance metrics for a Random Forest model by permuting the response variable. Produces null distribution of importance metrics for each predictor variable and p-value of observed. Provides summary and visualization functions for 'randomForest' results.

Last updated 4 days ago

jagscpp

5.44 score 27 stars 2.0k downloads

CruzPlot - Plot Shipboard DAS Data

A utility program oriented to create maps, plot data, and do basic data summaries of DAS data files. These files are typically, but do not have to be DAS <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF> data produced by the Southwest Fisheries Science Center (SWFSC) program 'WinCruz'.

Last updated 6 months ago

jagscpp

3.85 score 2 stars 2 scripts 279 downloads

swfscAirDAS - Southwest Fisheries Science Center Aerial DAS Data Processing

Process and summarize aerial survey 'DAS' data (AirDAS) <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-185.PDF> collected using an aerial survey program from the Southwest Fisheries Science Center (SWFSC) <https://www.fisheries.noaa.gov/west-coast/science-data/california-current-marine-mammal-assessment-program>. PDF files detailing the relevant AirDAS data formats are included in this package.

Last updated 6 months ago

jagscpp

3.70 score 7 scripts 236 downloads

banter - BioAcoustic eveNT classifiER

Create a hierarchical acoustic event species classifier out of multiple call type detectors as described in Rankin et al (2017) <doi:10.1111/mms.12381>.

Last updated 1 years ago

acousticsbioacousticscetaceansclassificationdolphinsmachine-learningnoaarandom-forestspecies-identificationsupervised-learningsupervised-machine-learningwhalesjagscpp

3.65 score 9 stars 269 downloads

sprex - Species Richness and Extrapolation

Functions for calculating species richness for rarefaction and extrapolation, primarily non-parametric species richness such as jackknife, Chao1, and ACE. Also available are functions for plotting species richness and extrapolation curves, and computing standard diversity and entropy indices.

Last updated 4 days ago

2.70 score 1 stars 279 downloads