rfPermute - Estimate Permutation p-Values for Random Forest Importance Metrics
Estimate significance of importance metrics for a Random Forest model by permuting the response variable. Produces null distribution of importance metrics for each predictor variable and p-value of observed. Provides summary and visualization functions for 'randomForest' results.
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7.12 score 28 stars 1 dependents 160 scripts 2.0k downloadsswfscDAS - Processing DAS Data Files
Process and summarize DAS data files. These files are typically, but do not have to be DAS <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF> data produced by the Southwest Fisheries Science Center (SWFSC) program 'WinCruz'. This package standardizes and streamlines basic DAS data processing, and includes a PDF with the DAS data format requirements expected by the package.
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5.92 score 4 stars 1 dependents 35 scripts 192 downloadseSDM - Ensemble Tool for Predictions from Species Distribution Models
A tool which allows users to create and evaluate ensembles of species distribution model (SDM) predictions. Functionality is offered through R functions or a GUI (R Shiny app). This tool can assist users in identifying spatial uncertainties and making informed conservation and management decisions. The package is further described in Woodman et al (2019) <doi:10.1111/2041-210X.13283>.
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5.14 score 11 stars 25 scripts 268 downloadsbanter - BioAcoustic eveNT classifiER
Create a hierarchical acoustic event species classifier out of multiple call type detectors as described in Rankin et al (2017) <doi:10.1111/mms.12381>.
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acousticsbioacousticscetaceansclassificationdolphinsmachine-learningnoaarandom-forestspecies-identificationsupervised-learningsupervised-machine-learningwhales
4.52 score 9 stars 37 scripts 253 downloadssprex - Species Richness and Extrapolation
Functions for calculating species richness for rarefaction and extrapolation, primarily non-parametric species richness such as jackknife, Chao1, and ACE. Also available are functions for plotting species richness and extrapolation curves, and computing standard diversity and entropy indices.
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2.85 score 1 stars 14 scripts 194 downloads